Martin Meinel

Martin Meinel

Postdoctoral researcher in computational biology

Helmholtz Munich

Biography

I am a postdoctoral researcher in the Casale Lab at Helmholtz Munich, focusing on genotype-context interactions, revealing cellular contexts where variants affect expression.

During my Ph.D. I was part of Menden Lab at Helmholtz Munich under the joint supervision of Michael Menden, Natalie Garzorz-Stark, and Francesco Paolo Casale. Furthermore, I was honored to be a Chan Zuckerberg Initiative resident with Theofanis Karaletsos.

My research centers on biomarker discovery for diagnostics and early therapeutic targeting, leveraging transcriptomics data across different resolutions (bulk, qPCR, single-cell, spatial) together with single-cell genetics data. I developed SAFARI, a biomarker discovery framework designed for rare conditions with limited cohort sizes, and used it to reveal a sparse gene signature discriminating early mycosis fungoides from eczema and psoriasis. The markers are covered by a published patent application and are implemented in the research-use-only diagnostic tool Erysk from Dermagnostix.

More recently, I developed FocusMR, an attention-based single-cell Mendelian Randomization framework that combines statistical genetics with multiple instance learning to pinpoint the cellular contexts in which genes act as disease drivers. These mechanistic insights enable more precise therapeutic targeting. This work was selected for oral presentation at the NeurIPS 2025 AI4D3 workshop.

Interests
  • Biomarker identification
  • Single-cell genetics
  • Causal inference
  • Early target discovery
Education
  • PhD in Machine Learning for Health, 2021 - 2026

    Helmholtz Munich

  • TUM Skills Excellence Program with Major in Data Engineering & Analytics and Minor in Economics, 2021

    Technical University of Munich (TUM)

  • M.Sc. in Data Engineering & Analytics, 2018 - 2020

    Technical University of Munich (TUM)

  • B.Sc. in Applied Informatics with Minor in Engineering Science, 2014 - 2017

    University of Bayreuth